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  • API
    • dvpio.read.image.read_czi
    • dvpio.read.image.read_openslide
    • dvpio.read.image.read_custom
    • dvpio.read.image.read_metadata
    • dvpio.read.shapes.read_lmd
    • dvpio.read.shapes.transform_shapes
    • dvpio.read.omics.available_reader
    • dvpio.read.omics.parse_df
    • dvpio.read.omics.read_precursor_table
    • dvpio.read.omics.read_pg_table
    • dvpio.write.image.write_ome_tiff
    • dvpio.write.shapes.write_lmd
  • Tutorials
    • Spatialdata and DVP
    • Spatialdata - A quick introduction
    • Read DVP data into the spatialdata format
    • Real-world example - Analysis of scDVP liver zonation dataset
    • Read, inspect, and write shapes
    • DVP-IO x scPortrait
    • DVP-IO x SOPA/Cellpose
  • FAQ
  • Changelog
  • Contributing guide
  • References

Index

A | P | R | T | W

A

  • available_reader() (in module dvpio.read.omics)

P

  • parse_df() (in module dvpio.read.omics)

R

  • read_custom() (in module dvpio.read.image)
  • read_czi() (in module dvpio.read.image)
  • read_lmd() (in module dvpio.read.shapes)
  • read_metadata() (in module dvpio.read.image)
  • read_openslide() (in module dvpio.read.image)
  • read_pg_table() (in module dvpio.read.omics)
  • read_precursor_table() (in module dvpio.read.omics)

T

  • transform_shapes() (in module dvpio.read.shapes)

W

  • write_lmd() (in module dvpio.write.shapes)
  • write_ome_tiff() (in module dvpio.write.image)

By Lucas Diedrich

© Copyright 2026, Lucas Diedrich..