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dvp-io

  • API
    • dvpio.read.image.read_czi
    • dvpio.read.image.read_openslide
    • dvpio.read.image.read_custom
    • dvpio.read.image.read_metadata
    • dvpio.read.shapes.read_lmd
    • dvpio.read.shapes.transform_shapes
    • dvpio.read.omics.available_reader
    • dvpio.read.omics.parse_df
    • dvpio.read.omics.read_precursor_table
    • dvpio.read.omics.read_pg_table
    • dvpio.write.write_lmd
  • Tutorials
    • Spatialdata and DVP
    • Spatialdata - A quick introduction
    • Read DVP data into the spatialdata format
    • Real-world example - Analysis of scDVP liver zonation dataset
    • Read, inspect, and write shapes
    • DVP-IO x scPortrait
    • DVP-IO x SOPA/Cellpose
  • FAQ
  • Changelog
  • Contributing guide
  • References
  • .md

Tutorials

Contents

  • Basics
  • Data loading
  • Data export
  • DVP-IO x External packages

Tutorials#

This page contains a few tutorials on how to use spatialdata and this package in your DVP workflow.

Basics#

  • Spatialdata and DVP
  • Spatialdata - A quick introduction

Data loading#

  • Read DVP data into the spatialdata format
  • Real-world example - Analysis of scDVP liver zonation dataset

Data export#

  • Read, inspect, and write shapes

DVP-IO x External packages#

  • DVP-IO x scPortrait
  • DVP-IO x SOPA/Cellpose

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dvpio.write.write_lmd

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Spatialdata and DVP

Contents
  • Basics
  • Data loading
  • Data export
  • DVP-IO x External packages

By Lucas Diedrich

© Copyright 2025, Lucas Diedrich..